NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066665_10511790

Scaffold Ga0066665_10511790


Overview

Basic Information
Taxon OID3300006796 Open in IMG/M
Scaffold IDGa0066665_10511790 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)982
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F002111Metagenome / Metatranscriptome592Y
F007262Metagenome / Metatranscriptome354Y

Sequences

Protein IDFamilyRBSSequence
Ga0066665_105117901F007262N/ALLWLWQYRTTRHRSGIYPVDRFGGYTSELAGPTTRFFLVLTALLTGFAVAIIVGHLVWGQKF*
Ga0066665_105117902F002111AGAAGMVAALPFVAYSSETEAIVPAADWEELYASLQSLKAHVQEYPGCQRFDVFVRAEDSGDMRIHCYTTWDTPWQLEAFLERGYTFERLLADFGSLAAERSLVMEKIF*
Ga0066665_105117903F000280GGAGMARPRRPARPLFGYRDVGEDVRHSRRAVSRAWVILAILAAAYLGWALTGYFIEPGLR*
Ga0066665_105117904F001935N/AMYLQHLSSLQFLSYAAFLGVVIAAVFRILPGRAPPLRTEPYSEDELGRHDRKLAKYFVGGGAFLLLGSLHMVVKNLPWTAEWLANAGYAGHLVRDLS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.