NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098054_1039698

Scaffold Ga0098054_1039698


Overview

Basic Information
Taxon OID3300006789 Open in IMG/M
Scaffold IDGa0098054_1039698 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1823
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007611Metagenome / Metatranscriptome348Y
F014834Metagenome / Metatranscriptome259Y
F039092Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0098054_10396982F039092N/AMKVTIGQVGKTYSVDSEDKVTVTHNHDSIVSVSGEYFKNKYTGEWLSELEVEQVMCQRHEEDEENRYY*
Ga0098054_10396983F007611N/AMKKKTITVLDYSSARVFQYSVKINVHSEQFIQFKGHRLKDVEWMEHQISNVITN*
Ga0098054_10396985F014834N/AMKDTNEIEKQLKNKADKYIKQKAKEMFEIHREIALYLGTSLPSFIDYVTHIRQYDEASPEDKSDHTAFCSPDYMEKKFRLELESNYKNRLVAKYTRELITKLDIFE*
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