NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098054_1003281

Scaffold Ga0098054_1003281


Overview

Basic Information
Taxon OID3300006789 Open in IMG/M
Scaffold IDGa0098054_1003281 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7411
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010167Metagenome307Y
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0098054_100328111F015741AGGMFSTGCSGFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSKDLSKVSRNNDIYREVCKKDKSMADKMKDKANRVLDKTLMATEEEDG*
Ga0098054_100328113F022754N/AMNELIITIMLIIPSPHKLIDWSVNEIPTQIQIIHKSGLEVSYTATPVSCKFRPRHKREMVFKSPNNRCYSVYDLSSPRFIRHPNHWYKIELPQ*
Ga0098054_100328114F013820AGGAGMSTMISTVIGFIDKAIPGQKTYALMIMGALMMGCQMLGYHTFSQEAWGLLGIGGAATWKMGADRGKPAAKK*
Ga0098054_100328115F036736GAGGMDKLNEMLIGSLALLGGFITKRIFNNHDTLSDRVTALEKIVLTKEDLNSLERNMEMVVAHLITSKGEK*
Ga0098054_10032812F010167N/AMIFAHTSLIQEGEAALFYRFSRPLNGYMIAAVLVSDNVEAKMNFAKVWTYFVSEIVQADDIYASIPLEGQNSMFNNYLDYHDTIDGLKIYKVDNFLKKQYSNYDKHLEQAGKKL*
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Institute for Fundamental Biomedical Research
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