NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079222_10003194

Scaffold Ga0079222_10003194


Overview

Basic Information
Taxon OID3300006755 Open in IMG/M
Scaffold IDGa0079222_10003194 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5138
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009838Metagenome312Y
F035954Metagenome / Metatranscriptome171N
F089271Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0079222_100031943F035954GGAMYSVILTIPLAQYDFFVEKIHPSSRAYELLMNGCFDQEICDGHVERKMQILCNKDEAVMLLQVAEEVCPRIIPKNLQRLAREIEY*
Ga0079222_100031944F009838N/AMSTKNFSRSRIKTIKVTCDRCQQVVEGIRGEEFSAGFYDMSKWEEYRHDNERYVCESCMFADPKYIERYGSCF*
Ga0079222_100031948F089271GGAMDIVSTIRKQLSGTPLAVPEPDYSGFTLIELFTARYSIDKLPRESSLEYEIQKRCEHIRQQMNGKGRAADAAAFKPYGLRAGVILFCLTVGPFLMFTFLSGISLIKGVDDTITLSGVWALLTLPALVMISMIGGRIDAERIIKCFNLSGHKAGENKNCFYEVMNAL*
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