NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098039_1024768

Scaffold Ga0098039_1024768


Overview

Basic Information
Taxon OID3300006753 Open in IMG/M
Scaffold IDGa0098039_1024768 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2149
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)210
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045194Metagenome153N
F059367Metagenome134N
F080240Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0098039_10247682F080240GAGGMMAIFSRIKPNIVFAIAAITGLGLLISLMGFYMEQEGIITGAGVGSIVAIANLAHKILDNE*
Ga0098039_10247683F059367GGTGGMNLFQKLAHMVGDRRIPVPTMPGFSIPRVSFGSRATLKIIVFTVLVSGGAVGTGVYFTIKDVVHSSWDWPDPGAAYYADDEGMSTMGQKLPLNEDGSESQTLEIRMAANSRMDVLSATLEMGKASVDCIAIERVSGTTGYLYVDTFTMDNLVAPTLSMNASFVHQMTLSGFVDGHHVGPTQNSAGAPDVTVESTRGAGTYTATGTVDRLLITLAGDAFLRSAQITGHCSTGPVDLDFLRVGNFNLTNITIGNDGDIDTVAVDIASDVVIHSLSDTLVDRSIQVK*
Ga0098039_10247684F045194AGGMAEEEQKPERKDEPNRVQMTSGDIVRLIIAAPVVFTWLFLGSRIIISATNSETVLNNVEPLLTVLAVLTIPVTGILQSLFSVGGDKK*
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