| Basic Information | |
|---|---|
| Taxon OID | 3300006752 Open in IMG/M |
| Scaffold ID | Ga0098048_1035218 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1617 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030088 | Metagenome | 186 | Y |
| F049552 | Metagenome / Metatranscriptome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098048_10352182 | F030088 | N/A | MRLNIVTKTKMSAKDMSRTLITLNQSEVFNFYGKMYVPFSAMSVVFNSKGATRKFDKDLDVLVHPKRGRLFMVPKNVEQFITVV* |
| Ga0098048_10352184 | F049552 | AGGA | MMKDKNKEFWQVINMMDFNGRGHKEAGRWLVEDSGLTFSEIKEIRNMAQRKVNVLYNKFSYDVRIGSDDGFDDVLWQTVANGFQSFHSCTAESLTEMYDENRYTESFAYSFHAVDEIKDEQFRANKFLKRERAMKRIEEMRRFGGGFDQKLLAAFEHADNNNKRKLAVGFPELFEHLVD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |