NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1034508

Scaffold Ga0098048_1034508


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1034508 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1637
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F004956Metagenome / Metatranscriptome417Y
F005495Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0098048_10345081F004956AGGAGMKMISPNGKISINAHPSKVESLLNMGWKEEAVHSQEKIKPSSKKKS
Ga0098048_10345083F002716GAGGMSQFRLETEEDMLGYLDINFGHGVSAVYINSGTSSTINIILNNEYIEQQEGIGVEALKPIAYCRTIDVPNVAFGNSLNVSAIKDTNGNILKAAQNYTVVNIQADRTGFSALMLEEV*
Ga0098048_10345084F001582N/AMPLESALDFNAYVDTTTGHGVTATFFEVQQSLWDDFPLIDTLFDIDSGFSKNINIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQQDKLRVDAITTNRGNVLKPTTTFVVKTVEPDNTGLVSLVLEEE*
Ga0098048_10345085F005495N/AMLKWNGGGNTPTLNMKKYKILQDTMAGGSKVHAGDIVELNEVEGHSLCAYHKAEIHVGKPKAEKQDRSVGLKTSKVKAPKTRAKK*
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