Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1000773 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1000773 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14746
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (37.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

14746

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (37.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011846	Metagenome / Metatranscriptome	286	Y
F019754	Metagenome	228	Y
F020000	Metagenome / Metatranscriptome	226	Y
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F075429	Metagenome	119	N
F087900	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100077314	F019754	AGGA	MNNSDDFMLPSELEPSWPPSDDDIEAMELDAYDRQKLDDLIAEELWRESLPSVPTPAERNPNLK*
Ga0098048_100077316	F020110	N/A	MSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIELSDDGPSLEESSEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA*
Ga0098048_100077318	F023484	GAGG	MNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNSCDPDQVLDADQVAKCKTFIRNHS*
Ga0098048_100077319	F022313	N/A	MTYHFLPREEYESAKLERILAELEAIIEREKKRHMMDEHLSHSMRDLLEDEIIPMLEAELNYDPTPDTAYDFFHQ*
Ga0098048_100077324	F075429	GAG	MPGTTELPETVTEFLEDGSVAVVVGHLRGWVSSAHLVEPKANQLMRQWLNEKSEALLNEDYDGAA*
Ga0098048_100077326	F011846	N/A	VKLSAGFIQSLEQENEGSSSKDNYLGYTKLEQGKPANFALLEQDPLEYWLVWAEAKASGSMKPFRFMGQPSSDEIDLELGSEYVQSMNYDKTAIRKPQQCLTWPVYNWDMDRVQVLEVSHISLARQFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHNETQMEKAWLQVQKGGFDLNRMVTGDDPFTES*
Ga0098048_100077329	F087900	AGGAG	VQQKINLYYCQVDDDDDHFPLAIARFTAYDEDHKPLSVEQVTYESDPNYFQAQVSAALSCGVDVSVITASPMEDFAWINQLSQQA*
Ga0098048_10007733	F020000	AGG	MADVGTTQVDRFTNTVEFTGNAMSSVDDWIQVHAHSSEFSFAANVTSSANFTIALEANFNGNGDWFTIDTSKTINAAGQYVYFYTGKAATLIRMRIASISSGVVAMTPHVVVAYHG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1000773

Overview

Ecosystem & Geography

Associated Families

Sequences