NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1006412

Scaffold Ga0098038_1006412


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1006412 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4763
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F033810Metagenome / Metatranscriptome176N
F073567Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0098038_100641215F001740N/AMYNPNNPSNWSWSKAFAEMEKTVNQAELTQQSINHVINYTGEANGVFMTLSKNQQDDVYEILGQIL*
Ga0098038_100641218F073567N/AMNNLTKKQSHEITNLYDMLSNGWHYTNHPMHYKFMQAHNDLPDYNE*
Ga0098038_10064127F033810N/AMSKSKQIYWNPDTIDHFIFISNYADVDQVLTQVEQFVSIDCELQGNDTEKDLVEDLMNKIYERRYE*
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