NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074055_11500798

Scaffold Ga0074055_11500798


Overview

Basic Information
Taxon OID3300006573 Open in IMG/M
Scaffold IDGa0074055_11500798 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)612
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020210Metagenome / Metatranscriptome225N
F061054Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0074055_115007981F061054N/AQDHPDRMRAVTALNDRTVPGLDAHGFDYKPRVGISRNVFCKACDQGFNVTPDPPKVYFVQRIGRRPRA*
Ga0074055_115007982F020210N/ASAMSSQAGGMARTIGGGHPRAMLDLAQVRTLLLAERSRDVGVITEAVDAVLATSPEVSPLDIEMVFRDAGSPAYLISKPELTIVFGMPAWRSALDRLGMSPQENRYALAVTTGH*

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