NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070744_10050030

Scaffold Ga0070744_10050030


Overview

Basic Information
Taxon OID3300006484 Open in IMG/M
Scaffold IDGa0070744_10050030 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1225
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006220Metagenome378Y
F007310Metagenome353Y
F013084Metagenome274Y
F018927Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0070744_100500301F006220N/AMKKFKKFIEELAIATGTEMMRASQMRPTTFKDKSKYSRKQKHKNRQDKNSGDSYLQSL*
Ga0070744_100500302F007310N/AMRTVLWVTNDNERWYNHHHYEFLIEDITGFNLQKDLCAESVKYMAKRLKDTPYNRVFRNKYSIYQDEYKTLVEKFNSQADNNGRIVVE*
Ga0070744_100500303F013084N/AMGILSILGLMEETKNIVLSRGHNVKNWQVLGNDCYALECADCKKTVMIKEHPLPNEIKVGGEAVAVNCVKPVKEKKLRKK*
Ga0070744_100500304F018927N/ATVDGTSTFYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAEVDRNGVKHIIPIGNELLEVN*
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