NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070744_10003761

Scaffold Ga0070744_10003761


Overview

Basic Information
Taxon OID3300006484 Open in IMG/M
Scaffold IDGa0070744_10003761 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4560
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000450Metagenome / Metatranscriptome1126Y
F000852Metagenome / Metatranscriptome860Y
F001460Metagenome / Metatranscriptome690Y
F001781Metagenome / Metatranscriptome635Y
F002387Metagenome / Metatranscriptome565Y
F007470Metagenome / Metatranscriptome350Y
F009685Metagenome / Metatranscriptome314Y
F033433Metagenome / Metatranscriptome177Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0070744_1000376110F001460GAGGMLGYDEIDLNRMIDAIHDAKLFYLRSPSDLIDKEPLVKDLQDAVSFLQGLWAEGYFD*
Ga0070744_1000376111F002387AGGCGGMASFLEDVNQMVLDAVMVDIGAQLFDEWMNANLDEGQYYADKRFAEMSGDEFIMNEFNKFYELKEEDEDYQC*
Ga0070744_1000376113F000450GGCGGMGDRANFGFVQPNGQTIVLYGHWAGYNMLGRLADAVIVARPRWTDSSYATRIAISQIVADQWNMETGWGLHVNEIGDNEHKIAIIDWDQQTFSLHEQSDYRDESNKIRGMKNEAIFTMDLAAFCEKYALENILVN*
Ga0070744_1000376115F007470N/ADKMDYQNGFEDGVKFAREVIIANIRLWAEDNDEGQVLDDVADRIEFGTVDYDL*
Ga0070744_100037613F000852GGAMTTKREYLKQQGITVGARGRFSGAAKTAIQEALNKGVTFTSEKPVQKAK*
Ga0070744_100037614F009685GAGGMKMSDEYINERLNTAQKLLWGGSETENIAAHNIISKLIKDRMQHSQPGAELPGYDHN*
Ga0070744_100037615F001781GAGMKPQDKEKLNACLEILDSTDLGLSMVWLWTWSTIKNFMGDETFIMKCSEQDMWDHLCEAVEAGHGFSLEYGAEQHHDDVMEWMLNRDYMVDSMFEEDEDEDEDE*
Ga0070744_100037616F033433AGGAMYNKPSLEIVEVNYSVSPGGIDEFEVYSLDERDSFDPPIFSTTSLHEAVQYCYDLGKDFIVRTFAEWEARELA*
Ga0070744_100037617F000263AGGMNQEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIAERNNQNV*
Ga0070744_100037618F063705GAGGMTKSSHFLEYIRLHKISLEQDWDAAKNNLPLNEDEYDPSDDYFEGAIAATEHLLSVATDIMNSTNERYE*
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