| Basic Information | |
|---|---|
| Taxon OID | 3300006484 Open in IMG/M |
| Scaffold ID | Ga0070744_10000414 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12243 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (66.67%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F006846 | Metagenome / Metatranscriptome | 363 | Y |
| F020171 | Metagenome / Metatranscriptome | 225 | Y |
| F021988 | Metagenome / Metatranscriptome | 216 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070744_1000041411 | F006846 | N/A | MLYELVEKYLMRPRRLREAIQAVVRDNDELLRIIKQHEEDDTPTNLTWSEGDTWYGWTFNPVRGRYYFDDIGNQSLMGLWEDQWAREAEESNV* |
| Ga0070744_1000041421 | F000852 | N/A | LKGDYQMATKREYLKSQGITVGVRGRFSGAAKVALAEAVAKGVTFTAEVPANKAK* |
| Ga0070744_1000041422 | F000441 | AGGA | MRSLKMMRRNQMKMSDIYLNDQLDKAQKLLWGGSETENIEAHNIIAKLISDRIEQADLS* |
| Ga0070744_1000041427 | F020171 | AGGCGG | MAEQFIDTIAEHITGAMQQEIGEALFDQWSYNNLEEGEAYAEFRFMEYASRELKQQYNEYYGYIEGDEFLL* |
| Ga0070744_100004143 | F021988 | AGG | MTNSIKKEDGTGMVPPANAGAPAGAVTSERTPKRYPRQGLKVDINRHGIRRETSLVPKPPKKTGRKKI* |
| Ga0070744_1000041430 | F001125 | AGGCGG | MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDESYATRIAISHLINDEWKSETGWGISVNQLADNEHKVPIINWAAKTFTLMEEDLTTEVFSSSLDVFVNKYSQLEEPAMV* |
| Ga0070744_1000041433 | F000311 | GGA | MYFELTAPSQVAFARAIWDAELIGLDPMTIGPLTFNIGTGSIEKVSRIRDKYNLKESYTSEYEPTGYTGR* |
| Ga0070744_1000041434 | F003422 | N/A | MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPSTQTKEEKMEETTTPAVTVPDTYNSNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKVANMLQGKIDTVKDIITEAYGDSEDQETLRSIAEALDIPLTRTVEWTASIEVSGTIELDLLSDYDTDIESEITDTLYVDAQNGNVEIVDQEVCHVREC* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |