| Basic Information | |
|---|---|
| Taxon OID | 3300006473 Open in IMG/M |
| Scaffold ID | Ga0100239_109838 Open in IMG/M |
| Source Dataset Name | Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Agriculture and Agri-Food Canada |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 872 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sherbrooke, QC, Canada | |||||||
| Coordinates | Lat. (o) | 45.4 | Long. (o) | -71.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017851 | Metagenome / Metatranscriptome | 238 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0100239_1098381 | F017851 | AGGAGG | MTSALSQRFFETFPPEVARGILEGDRLRIHAVKVSVVCEGDEVGFAIDTLPRDGRPKAWEKTTWKICRILKREVDRLSPETKNLLAALAHITPDEPLLLFQIETWLSMQDDGGSWWEAPAYLSLIATSLPD |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |