NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099972_10069755

Scaffold Ga0099972_10069755


Overview

Basic Information
Taxon OID3300006467 Open in IMG/M
Scaffold IDGa0099972_10069755 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory, Brown University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)886
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location
Location NameRhode Island
CoordinatesLat. (o)40.435Long. (o)-70.483Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010919Metagenome / Metatranscriptome297Y
F011006Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0099972_100697551F011006AGAAGMKKIIDKFLIKRSIRPYKVVPLSTGVIVEHYRNGKLKTEY
Ga0099972_100697553F010919N/AMTETVNLPLEEFKKLYAIKIRLETYFKYMQDDRGVLKDIAPTFLDDAKEYIKEYNELTNEKSYV*

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