| Basic Information | |
|---|---|
| Taxon OID | 3300006310 Open in IMG/M |
| Scaffold ID | Ga0068471_1332837 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4271 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000423 | Metagenome / Metatranscriptome | 1156 | Y |
| F005071 | Metagenome | 413 | Y |
| F011673 | Metagenome | 288 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068471_13328373 | F005071 | AGGA | MTQLNTKEKCTLRDLIKIEIKSLTKTGYGHYKYFEDEYCAFLLKLGRKLKLDTQQKIKAKKVYR* |
| Ga0068471_13328374 | F011673 | GGA | MTSKPSTFKILPIYLQPKILSAVSYIHQSPNKEIGLERINKVSRKLSDREMKYVLSLLVFDSLLDMVKDSEDFKKFVSMKRTVH* |
| Ga0068471_13328375 | F000423 | GAGG | MTINKAIFYIKYYATKHGCVIERKATLDEECFEGHHKKFGYPYKKYIDVWATEEVNNGKPQYRTASKKWEINDEQTLNI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |