NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1211018

Scaffold Ga0068471_1211018


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1211018 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2085
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024128Metagenome207Y
F054947Metagenome139N
F062152Metagenome / Metatranscriptome131Y
F078832Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_12110181F078832AGGAMAVKNQRISDELVETYILHYGFEQKSSKMYECPGGHIWHWADIVDVIEEMTPPELYNLCFLAEQDNVKNEEYFDLTRG
Ga0068471_12110182F054947GGAGMQMISNKNLKTIFKHFSNEILEELIPNDMVVPKLRMEFSMQNLSWLCRNLQIKNKQHPEIKQTMAKLNTLRMKILLKGK*
Ga0068471_12110185F024128N/AMITKKDTKKYLEKTKKVLERGNGSLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRIVMGSPVLQFAGPEQDVRNLTEYKK
Ga0068471_12110186F062152N/AMGPHYMNELVKYINKLNEKTRARGAVGFLTNDPEHWAGYNVYTIEQLLDYLEREFQHNIKKDERRNY*
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