NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1068155

Scaffold Ga0068471_1068155


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1068155 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3840
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_10681553F015741GGAGMKLKLKLGLVAVCLMFSMGCSFPWASIVPPVANFALGFYDANDYYSKECLWYDEVKLNDQTKEWLLESNPPEIVGKDLSQVSRNNDIYREVCKEHKSMADKMKDKANRVLDNTLMATEEKDGQTNN*
Ga0068471_10681555F022754N/AMNELIITIMLVIPSPHKLVNWSVNQIPTQIQIIHETGLEVSYNAAPVSCSFKPRHDKEMVFRSPNNRCYSVYDLSSPRFVRHPDYWYKVELPKPPLVNLGE*
Ga0068471_10681556F013820AGGAGMVPTIVTMIDKLMPGGKTYALMGLGVLMTVCQMGGWHNFSPEAWGLLGIGGAATWKMGADRGKPAVKK*
Ga0068471_10681557F036736GAGGMDKLNEMLIGTLALMGAFITKRVFNNHDTLSDRITALEKIVLTKEDINGLERDVSMIVTHLITKGKSD*
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