NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075447_10025318

Scaffold Ga0075447_10025318


Overview

Basic Information
Taxon OID3300006191 Open in IMG/M
Scaffold IDGa0075447_10025318 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2321
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y

Sequences

Protein IDFamilyRBSSequence
Ga0075447_100253183F002374N/AMISNPNMDQFLLYTSIILASVTFFLCLYVCARVGKLLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLNYVEKQRSNVTNINNKGIGG*
Ga0075447_100253185F001611AGGAMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRISSAVDTAGTTAVADTFLNVSVNNAEFSKDVSVPALVTGSPFGVLNGTYVNNDLITTGAQRNRVLVRFTNDTAGSRTIRCGIFIGG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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