NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082029_1757978

Scaffold Ga0082029_1757978


Overview

Basic Information
Taxon OID3300006169 Open in IMG/M
Scaffold IDGa0082029_1757978 Open in IMG/M
Source Dataset NameTermite nest microbial communities from Madurai, India
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29953
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (55.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest → Termite Nest Microbial Communities From Madurai, India

Source Dataset Sampling Location
Location NameMKU,India
CoordinatesLat. (o)9.941418Long. (o)78.008896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000719Metagenome923Y
F004395Metagenome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0082029_175797815F000719GAGGMKNTRFKIFIAVVLFAFASTSVNAKGDDFKSVVKMIEEFYGVKHQGIPFLAKAGMKVATTAARIKGGQARRIAEAGSIKLAVFENQDFAGDFTKFRRSLNGALNTTWMPLIQTLSATTQDQNYIFLREAGDKVNVLVITIAQRDATVVQVNLSRKNLALLMKDPEGTGKSITEEATIIDQE*
Ga0082029_175797816F004395AGGAGMRRLLTLILLPALCFISIHAQEVEDTIKIKTRVVFLDALVKDKKTNLPISSLTTENFEVLDDGKPRNISYFTREGQARKPLALILILDLREDGAGRFLKRTEILKAMEDELAKLPPGDEVAIMAMDMAEDEERFWLTDFTNDRTKLAAALARVPALCGPGTASPEGAERITHKVEGEGKPDDIIETETIRGRKGSTVTRETRRDGSVNVKRMSKDGKVTIDMGDVYDMAAAVRDATRKAEQVRPNSQPSIVWVSDGIAPIFFEDRDATEQILIRNNVIFNSLTVDMRTLFKFLMPVAKPIGGWLGMSIYGSAKYLAQRSGGEAVKVGRAKDYGTGLSRIIGNLTARYSLGFALAESEVDDGRMHTLEVRVKAKDEKGKTRKLQVSSRQGYYMSTQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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