| Basic Information | |
|---|---|
| Taxon OID | 3300006169 Open in IMG/M |
| Scaffold ID | Ga0082029_1347764 Open in IMG/M |
| Source Dataset Name | Termite nest microbial communities from Madurai, India |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | BGI Tech Solutions Co., Ltd. |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3045 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest → Termite Nest Microbial Communities From Madurai, India |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | MKU,India | |||||||
| Coordinates | Lat. (o) | 9.941418 | Long. (o) | 78.008896 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008717 | Metagenome / Metatranscriptome | 329 | Y |
| F009920 | Metagenome / Metatranscriptome | 311 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0082029_13477642 | F009920 | AGGAG | MNGSWHYVMEDRGLRRQDLAQKVAERESYARSKHKPSLRARIARRLFELAVAAEREETWRLVWERLEARGRL* |
| Ga0082029_13477644 | F008717 | AGGAGG | MTDSTDGATFQELFSVIQDYAQRDHNHQVKALRVIAAAYLPLYDLPPMPDAREVVEDVLTRSDFLVTDPQSGRLEPASVDAVVSVATSRLDEEDIRWGAGCLLNVMDALRRRAQSEGYETYVLDADEVLDGLETILAADIVEDVI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |