| Basic Information | |
|---|---|
| Taxon OID | 3300006086 Open in IMG/M |
| Scaffold ID | Ga0075019_10564529 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 711 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pennsylvania, USA | |||||||
| Coordinates | Lat. (o) | 41.1289 | Long. (o) | -78.4195 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002504 | Metagenome / Metatranscriptome | 553 | Y |
| F002536 | Metagenome / Metatranscriptome | 551 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075019_105645291 | F002536 | GGAGG | MGGSAAGVATRARTIGVDFALIGHQESWRAAADVLAVLRGPERTPLPDDEIKDILPWIPPRAVCHVEVGSIVDTRISGAKARGLYIDSFIPPDRLDAAYVHENITRVRGAAACAIKAGAK |
| Ga0075019_105645292 | F002504 | N/A | RVGKVGPGSLGKTFARIAAEEGEHVDHAMSILRAERALDPQRFDDKLHRLHLDVMTTLAQMLAKECKDGHCEVCHASCVKPSLFDVSLSAAELRGASLQQYLKTLDMLGIPGEVTLTWVAQLPV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |