| Basic Information | |
|---|---|
| Taxon OID | 3300006086 Open in IMG/M |
| Scaffold ID | Ga0075019_10181948 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1238 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pennsylvania, USA | |||||||
| Coordinates | Lat. (o) | 41.1289 | Long. (o) | -78.4195 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001473 | Metagenome / Metatranscriptome | 688 | Y |
| F002408 | Metagenome / Metatranscriptome | 562 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075019_101819483 | F001473 | GGAG | MESEYQTVGQMYERLRLMIRQRNDTGFRLTVTDAVLEPRNPFEPANKRRPKSVVAITLVLAFVLALIFLYFSFHHAR* |
| Ga0075019_101819484 | F002408 | N/A | DLGVLIRDVYRRQDEVFVRFSIENRSSQTLRAGPPAVVSLTGLKFDRSLWTFQNAQLGMEYASRLKTYNAPIPVKITQCEPGVAEVGPGEARIGLIALQLPPVNPDAKKTQPTVLKILFPIDRAGNLTATLVL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |