NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081761_1112541

Scaffold Ga0081761_1112541


Overview

Basic Information
Taxon OID3300006082 Open in IMG/M
Scaffold IDGa0081761_1112541 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2037
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial seamount, northeast pacific ocean
CoordinatesLat. (o)45.933231Long. (o)-130.013645Alt. (m)Depth (m)1542
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020018Metagenome226Y
F062817Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0081761_11125412F062817AGGAGGMTADRLTEEADWKDGMNIFRSRVIEQLDGILEVLDILEREITKLKNKENTP*
Ga0081761_11125413F020018GGAMIQITKWLNPDDETWYKGTYISVLEWLMIEKESISRLTGKITTIRTNSEGAKAIFRRKRIK*

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