| Basic Information | |
|---|---|
| Taxon OID | 3300006077 Open in IMG/M |
| Scaffold ID | Ga0081594_1125612 Open in IMG/M |
| Source Dataset Name | Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid B |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Max Planck Institute for Plant Breeding Research |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1138 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Manus Basin, Bismarck Sea | |||||||
| Coordinates | Lat. (o) | -3.7992608 | Long. (o) | 152.1013353 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030784 | Metagenome / Metatranscriptome | 184 | Y |
| F033075 | Metagenome | 178 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081594_11256122 | F030784 | AGGAGG | MFNTYIDDKDMIPVLLAYDWIISKDTWTDCPYETYQSIKKRELHNGNAVEYLTFLRGEMS |
| Ga0081594_11256124 | F033075 | GGAG | MKNKSPMQKAYEHVLHSYNPLEIKDILIHGASRKATKHKSEDDILTYYANHNEGIHHDLLDAKFKYCREYLLCQAAYNRTAKTQEDQYEFLRDVVWLYIDKVADELGDEYKLHDKPRKEIEDEVLAIDLEFRKRQLQVIDGGKS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |