Scaffold Ga0075163

Basic Information
Taxon OID	3300006056 Open in IMG/M
Scaffold ID	Ga0075163_10001360 Open in IMG/M
Source Dataset Name	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32779
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (13.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

32779

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (13.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Ecosystem

Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location Name	Milwaukee, Wisconsin, USA
Coordinates	Lat. (^o)	43.023	Long. (^o)	-87.895	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Milwaukee, Wisconsin, USA

Coordinates

Lat. (^o)

43.023

Long. (^o)

-87.895

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002779	Metagenome / Metatranscriptome	530	Y
F006895	Metagenome / Metatranscriptome	362	Y
F049638	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075163_1000136012	F002779	N/A	MKNLKLELFNFKKDLSLDQEEISVIVEGHMNACNAHSEKTIISSLNERLKPYTYDKSVKSLLEGLNDDMATYELLYELKNLYSVLNTKNQGELYRQPINVLLQTINLEADQDRMSKILNELVVYDWVPEIKLFVHNLTKSPEKRSNLLSGGSAESIFTIVEQVEQGHIALVKDSWFLLTENAIEKTLLETHIKDEETLRSLRTLETALNYSTITENRVNFRISEYLTVGLGVGNKGGLYINDDELNEETTLESLFNSPIIPIVNKNFYPVILETSKNLDKFVELDVVKRVGNLVNPYLEVFAFNYKNNIFVYRCDERYGNSFFKYDSALELVNEVRNELNYDLTYFFENKLGKELIVKRKLEDKERDITLKLEDVNFNIDKVKNSIKMIGESAVLSTALSNLEKRKTALDAELSGVKELQYNERIKL*
Ga0075163_1000136014	F006895	N/A	MIGDSFNFEDVFFRDLTVCVLNTLEGQIRWTNKFTSGDVKVEVPFYYSMTGDERFLLDSFTDDIVSGDASGNGRYVELNTDIIPRGHITLTSFNIRSDEFTNPNVWLRTVVENEVEVKKVLSKVRAIPISVTYDLAILLSSEVDSFKCSQAIMDTMWLYRFMYFEHNFMNIDAVMLMPDNMNVEMTREKNITSDNAIKMSVSFEVQTYYPAFIKDEGPDNTDSYSLEPRRTKWYNNILAARSRGLAGESQQTNLRGSNIKPSGSSVRDKGKGK*
Ga0075163_100013603	F049638	N/A	MKAKEVMSKYNITRRTLSNWVKKGVITVELTPTGRYIYIEKNKVSDEKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075163_10001360

Overview

Ecosystem & Geography

Associated Families

Sequences