NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075365_10003464

Scaffold Ga0075365_10003464


Overview

Basic Information
Taxon OID3300006038 Open in IMG/M
Scaffold IDGa0075365_10003464 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8136
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023457Metagenome / Metatranscriptome210Y
F048421Metagenome / Metatranscriptome148N
F082937Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0075365_100034642F082937AGGAGMGSGLFALAAFFLGWISGATASPLVATAAGASLISHREVETVRWRHRYRGYGWRERGAEAREGSSESGRTADDDGLSRPPEIVQPDAGRRSYRSRSWRRDAARTEPGGFALNSGSSYRVAPADMVRPDARRRRGWVDPPPP*
Ga0075365_100034643F048421GGGGGMARMPLKFRSTGVAFSSDETSKDCTAWSGGWTVGYIYYQARQEDRDEPRSWIWSIHGVPGQPPGMRGHGVSPTLEAAQASLEESWQTWLSWAQLAEREPAG*
Ga0075365_100034646F023457AGAAGMSHSRIEIYWKRIDTAPQGVIAQVRVTDGCGSDYLLPYPCKLSKDGWVNAASGKPLAVRATYWKLYVETTPRKKAGKPGFQVKAPLLRHD*
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