Scaffold Ga0075465_10028186

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075465_10028186

Scaffold Ga0075465_10028186

Overview

Basic Information
Taxon OID	3300006037 Open in IMG/M
Scaffold ID	Ga0075465_10028186 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1136
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F092293	Metagenome / Metatranscriptome	107	N
F092294	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075465_100281861	F092294	N/A	MSCGEKSNAFENLHDVTLQRLDVYHRNNGGYVFYDSKHFAPTVDHWNTVPVIYVETEPGKPAEHPQFEDIANDTLPPKFHKVGSVSAVHLTESGEKALKGAIAFSDPAIEAKAAAGELSLSTGLASPEAPDPRLPGATKIAGPVTPNHVLVFDRGACPNCYPNDSGAMFHNLQEPEEMDDESKGLLKRIADALTKTPEPVQHANMTEFENL
Ga0075465_100281862	F092293	GAGG	MTRPPALTDRQIQIIRENLDLFPADILKLPEFVDADVTRHTIRNYQRRLKNAAVIDEEEDLLARLKKYMDRHGLESRFHGPRGVTGFIRHLETKIHLRAIERDNSENTVS*

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