| Basic Information | |
|---|---|
| Taxon OID | 3300005985 Open in IMG/M |
| Scaffold ID | Ga0081539_10000005 Open in IMG/M |
| Source Dataset Name | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 549026 |
| Total Scaffold Genes | 570 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 387 (67.89%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | University of Puerto Rico, San Juan, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.402889 | Long. (o) | -66.050054 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022390 | Metagenome / Metatranscriptome | 214 | N |
| F023824 | Metagenome | 208 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081539_10000005125 | F022390 | GAG | MVDVIVKITGLVVLAVAVMNLAHGALVAARLVAHVTRRYPHLRLDLWFPRWIHSRDAHSWLATWRGILRSGDPTMAAIRTDGRLVIARHVQLMLSSQAWVMVVATMVPRLS* |
| Ga0081539_10000005391 | F023824 | N/A | MTGSTIREAMKPRTCALALLLCLLTGAVAALAQSSLDPDRFFGLEWAGGERRGRPAVTGYVVNNYRVRAANMRLNIDTLDAGGKVVDTASGFVADVPPGARVYFEVPVKQKAPRYRVTITGWEWRESGQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |