NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075111_1014783

Scaffold Ga0075111_1014783


Overview

Basic Information
Taxon OID3300005911 Open in IMG/M
Scaffold IDGa0075111_1014783 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKK
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2543
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043342Metagenome / Metatranscriptome156Y
F043418Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0075111_10147831F043418N/AKMGMLDDYGIDTSEIEAPSYDLQDGIYEMTVGDVYVKQGSQAYPDRSWVIIEYLVGEEGKKKSELFELPADPENITDKERQKLGYYVARLLDLGVERAAVNDIDRDDLIGLRGSLQLYSNAGKGKNAGKMFQNIKNVKITETSAAPQPAQKKARQTAASNPFA*
Ga0075111_10147832F043342AGGAMTDATSELREFYNYIWGENPTVETITFVYLPVEHEGKWTPYMFEWPRQREGVIRHTLKWSAIKANVFYSPALFKAANPAKENVLGSWMLWVDFDGNAPKEWAQEEEEGSIFIPPPTLIVQSSIEGHEHCYWKLDEFVSDIEELEDKNRALAYVMHADTSGWDADQILRPIRTTNHKRNMPVIVKEWEREEPL*
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