NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078893_10300308

Scaffold Ga0078893_10300308


Overview

Basic Information
Taxon OID3300005837 Open in IMG/M
Scaffold IDGa0078893_10300308 Open in IMG/M
Source Dataset NameExploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2152
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F007750Metagenome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0078893_103003081F002374N/AMNQVLLYASLIVASLSFFLCVYACVRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTEKLGG*
Ga0078893_103003083F001611AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTNATRTIRCGVFIGG*
Ga0078893_103003084F007750N/AFLGDFGKFFGLGSSEQVLGDAGAAVGSLFGPEGAIIGQQVGKATGRATSNLAGDDNISPLSTADQAREQSAVPVSAIGNRPQETSTMTGTTGMVTQAGFGSLAPFVTGVGRLLGSKTGQIATGVGTAVGLGSSQFMGMNAREKPVLTQSRRNKAKVRQLVNFMGIEGTANFLSQSIGQNVSPNDVVMLLLRTFRNDGAYITKAQVXXHNKQV*
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Institute for Fundamental Biomedical Research
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