Scaffold Ga0078893

Basic Information
Taxon OID	3300005837 Open in IMG/M
Scaffold ID	Ga0078893_10064080 Open in IMG/M
Source Dataset Name	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005837 Open in IMG/M

Scaffold ID

Ga0078893_10064080 Open in IMG/M

Source Dataset Name

Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Australian Centre for Ecogenomics

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4163
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

4163

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Port Hacking, Australia

Coordinates

Lat. (^o)

-34.1192

Long. (^o)

151.2267

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019821	Metagenome	227	N
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F027158	Metagenome	195	N
F081221	Metagenome	114	N
F087026	Metagenome	110	Y
F101070	Metagenome	102	Y
F105104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1006408010	F101070	AGGAGG	VGKNKIRVDPLEMEAGDLIVTDGRMSLELGDVLLAVRKLSGEEMSESGKRHPFIDGRRVGDHWRLLSRLGVVEIWLDXXXXXXXXXXXXXKW*
Ga0078893_1006408011	F027158	GGAGG	MTNPSQTPISELTLAQVISLTQAGLIGLKDGSPVYTDKADRAAKAGATKARRQGVLSEVTEFFASPQGQNAKFFSVKPTSGMFAACALAINTKVQASREDILWSLKQLEKQGLASQVGIKSKEEDGKKFMVVVPVAEVNNFQRRWVHTIEAAPAEDAPAQDDSAE*
Ga0078893_100640802	F019821	GGAG	MTISNQTTLQELIDLGLFKTADIEKFNNKLTRGADRAARKALVEGTMSAIKALIQSEAHEGNRYWSVKPAAHSLGFMSYIETDRGTILKALTKLTEEGYLTKVGLKKVDGKLTELDKTQVNAFQLRYIVTPVEEADAAVDEEGS*
Ga0078893_100640803	F021526	GGAG	MRYFSIDYRSPPSGMGQIIDTTKPEKVGDQYNYILIDYGSDPHEDISYVMTKYFYSEQADQEGWAGPVMTDIFQYLRDQKVTHVLDGELSYNYEGGNEKDFKGLFTLDRWIEIMTSFL*
Ga0078893_100640804	F026851	AGGA	MTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCEHNMVIIATELETHFGISA*
Ga0078893_100640806	F105104	AGGAG	MLHHIYYTNPAGADNYMIVPFDEIKGTVTFLESLDYEVVAYWPIQEEAQTWEQ*
Ga0078893_100640808	F081221	GGAG	MLAALYNISILLTGFAAIVCASLTAVALINLFASSMLTYRDDKLLLAWALPSGLFFSGLLMVMLGWT*
Ga0078893_100640809	F087026	AGGAGG	MERGRWKAGDLVRVESTQKTGWGDECHNHLVLVLRMYKRKRQQQHYPLTAELEAGTRERDVIYEVLRDDGKYVKLGLKDYSYPNLRLTNRLVQRSCAEEET*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078893_10064080

Overview

Ecosystem & Geography

Associated Families

Sequences