NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078893_10006402

Scaffold Ga0078893_10006402


Overview

Basic Information
Taxon OID3300005837 Open in IMG/M
Scaffold IDGa0078893_10006402 Open in IMG/M
Source Dataset NameExploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34955
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014509Metagenome262Y
F043440Metagenome / Metatranscriptome156Y
F093998Metagenome / Metatranscriptome106N
F100963Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0078893_1000640211F014509GGAGMGIHIGKHKRSTSWIGRFDPKDPRDMAEFQMVKSIVKACNSDKTKFRVEKKGRKPTNGFTYFGDCKGGIKNATLWDVYVYKRTYDYYNNKRIG*
Ga0078893_1000640219F043440AGGMKFFIIVSFIMANTAALDRPLYVFAKPNFETVTACRDYVAVMHQRIYSAASASYNYKHTPESIYCITADEVKDIFKYSYDQKEKKNI*
Ga0078893_1000640268F100963GAGGMTDGPLKRAFDLLDSEGVLSRELTTFKIRDSQLVKEVVTRTYYNNDYIDKIAITPIYKIEGEK*
Ga0078893_1000640270F093998GGAMNTSRSVFKDTLAMSMGMDRVLNEISFWESKSKKVKSVKKRLERLYAARTQLVENPKESKSLVDQLREINQS*
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