NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074470_11271842

Scaffold Ga0074470_11271842


Overview

Basic Information
Taxon OID3300005836 Open in IMG/M
Scaffold IDGa0074470_11271842 Open in IMG/M
Source Dataset NameMicrobial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35789
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (65.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameAstoria, Oregon, USA
CoordinatesLat. (o)46.15968Long. (o)-123.80651Alt. (m)Depth (m).06
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086755Metagenome / Metatranscriptome110Y
F086767Metagenome / Metatranscriptome110Y
F087262Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0074470_1127184219F087262AGGAGVKKHDKKLIHKALDGETSQSETKRLKAKLESDGRMRSEFELLKKVVKDTTKIRIEVPRNFTENVLRETQRREKPKA*
Ga0074470_1127184234F086767AGGAGGMVAVSRLLVALAFAGFIAPPLYADVIPTRRAVDTTDSAKKVESRLVQLGVSADSAKEQIQKLTDDQTTYFAGNPERIQLVGQENFGGQSDNLWWEWVFGLAALGGVAAFIVIEVGK*
Ga0074470_112718427F086755AGGAGVKKSLGTTLVAITALAAIMMKIVTKSWFGPMIVLVMAALYFVLTVVSEAFKIHGEKVQDRNRHP*
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