NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1026889

Scaffold Ga0079957_1026889


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1026889 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3883
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011367Metagenome / Metatranscriptome291Y
F019949Metagenome / Metatranscriptome226N
F028417Metagenome / Metatranscriptome191N
F030412Metagenome / Metatranscriptome185N
F039010Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10268891F028417AGAAGMATNELLDKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQDPKFKFINSYNDYTFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDP
Ga0079957_10268892F019949N/AMYQEKNRYSKRTLRFADDLLYNNSTIEDEAIKEILREELEKSIDKSAVFQLAFNTFKIEMQEIKLLRLVEKLLHTVDKMHNLSPLQKARKFSKIYELKQKVTQINPNWKISDSFHLKKYKILALIDKIDVKEEYNSVVNEEIYQQLINEVETAKRTNSTWQLDKELIIIKKIE*
Ga0079957_10268893F039010N/AMYSEKNYETEENEDLDANSHQSDDSSEVRRRFHDSMSYEMEILDQILNEMISVAENISENVTISQLKRCFECIDDMIVHTNQFINQAQSVEMKHFIRFYPLYDRIRHSIVRTLTIMNNLRKRNFFQLVPLVKDLILDLDEIKVLVSRTTLEQVEEVLEGYKIKRSYIRRKIENFI*
Ga0079957_10268894F011367N/AMEKSENSEVIEVDSHWSKEPSESVSRCHNFISHELENLDRILSEMIYNMGNSSEDTILLKLRECLGCINGIIIHASQFIDQTQAIERTHPIGLDSLQEGVRTNMTKTLIVTGKLRERNLLKLVPLVKDLTLDLSEIKILVSRTTLRQIENFLERYRFKKSYIRKKVENFQT*
Ga0079957_10268896F030412N/AMNRPCSKCDKTFFSCEKSAIGFNQPKGEQLTPIGLWNRRDNLVRELIESFNLMTVTVSRTIGTELQEHLAMRDLIKRIREIDDGWHLIVAPQGDNCLRIMHYDCHCNHNCRCDCRSRKDLHQHEKSTKN*
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