| Basic Information | |
|---|---|
| Taxon OID | 3300005805 Open in IMG/M |
| Scaffold ID | Ga0079957_1008312 Open in IMG/M |
| Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8037 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wichita, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002370 | Metagenome / Metatranscriptome | 566 | Y |
| F003266 | Metagenome / Metatranscriptome | 496 | Y |
| F042750 | Metagenome / Metatranscriptome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0079957_100831211 | F042750 | GGAGG | VIEQEIIEGHAASCALHDDGPCTCGTYEVLDELALEEAGLTEEDFV* |
| Ga0079957_100831215 | F003266 | GGA | MGQNHDTVKNVLDVASAIAAIGAFLELLTPVFGLIGAVWTLMRIAEMVTGKPFVELIRRKKPDAQQE* |
| Ga0079957_10083127 | F002370 | AGGAG | MDAKTAVHKHEKNMHPGKPMTKMAKGGKTNAQMKAMGRNLAKVANQKKSSFTYKKGA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |