NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1000282

Scaffold Ga0079957_1000282


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1000282 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44024
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005727Metagenome / Metatranscriptome392Y
F015704Metagenome / Metatranscriptome252Y
F029368Metagenome / Metatranscriptome188Y
F036668Metagenome / Metatranscriptome169Y
F068809Metagenome / Metatranscriptome124Y
F085368Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100028211F029368N/AMRYNPATDRAQSIDAIAEQCRNAILKADACRAIDAAYDEILQFATWENDVLVPCAA*
Ga0079957_100028218F015704N/AMTDSCFPAQIAEITNPDNGTIFWIEAAYAAKLHGLWDDFRTDYGTTDSFGGVDAGEFLVWLGY*
Ga0079957_100028219F085368N/AMTRFPLAMCSDLQTRQIKWISRADQLKNGSRPSAYIHWGVPATVIAAQYSEAHAPR*
Ga0079957_10002822F068809GAGMNYLTPDDLNNLIRLVEDNNQYNDDEDKEFWDDILIRLNQTYRHCLDD*
Ga0079957_10002823F036668N/AMTETDIISVREQIQNDLICLLESQFGEVDYLSEVQDLACQIVVDNFTQLLK*
Ga0079957_10002828F005727GGAMIKALTRSRSPQFHRATMLRLVIAGTLLWLLWEPIRPVRTVTADVLYTAGDLIRR*
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