NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1011171

Scaffold Ga0078117_1011171


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1011171 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3451
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F004666Metagenome / Metatranscriptome428Y
F005745Metagenome / Metatranscriptome391Y
F050227Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_101117112F000868GGAGMASFLENENQMVIDAEMSEIADQLLEDWINSNLDEGQLYSDWRIADMSSSNYLKGRFNQFYDLKPEDQYYLEWDEVE*
Ga0078117_101117113F050227N/ACRDCDSDNTMEYCENDCGEICSSCNNLGEADLDLVKECQTHKIYLDSEHVPDYRMEQVNG
Ga0078117_10111714F004666AGGAMTTKREYLASKGITVGRRGRFSAAAKQALAEAEKSGVKFTSETKQK*
Ga0078117_10111716F001019GGAGGMSNYEPTLEILEIEYSVSPGGVDTFEVYEINRIPLDCPIFETESLTDAVQFCYNLGQDFIVRTLAAWHRNEDTYAVV*
Ga0078117_10111719F005745AGGAGMHYDIENSEDLAPHLQRMVDHGVSGLDIMHGELKNLMLMADARFTEAQETEEENDYSDAMESMERKYWEGMSDAYTHLYKLTYDLSFAIAGLRKDDNGE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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