NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1001124

Scaffold Ga0078117_1001124


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1001124 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32329
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (92.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F004345Metagenome / Metatranscriptome442Y
F019820Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_100112410F004345GAGMIEHIIVGATGVGYAIVGTLQWLKGDLPNGMIWVGYAFAQVGLWMNLK*
Ga0078117_100112415F019820AGGAMSDLKPVKISGELFWTKWMAEFNTMFNEGNDRYECTIGNISDEDMAKLTSLGIRVKYKDAMGNYIVGKSKYLFAPLDADGKSVAIEALGNGSKCEALISSYKHKLSAKHGNAPSIQKIKVTEVKTYVPDAKVEEADDLL*
Ga0078117_100112439F000324GGAGMTVAILPKHIVNYDGAVLHIFHANKGEGIPQHSHAYAHLTTCLSGGCLIRKENKEIIMDKNTQPINLVASEWHEIEALEDGTVFMNVFAENKY*
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