| Basic Information | |
|---|---|
| Taxon OID | 3300005758 Open in IMG/M |
| Scaffold ID | Ga0078117_1000211 Open in IMG/M |
| Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 107062 |
| Total Scaffold Genes | 122 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (16.39%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Singapore | |||||||
| Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023065 | Metagenome / Metatranscriptome | 211 | Y |
| F036563 | Metagenome / Metatranscriptome | 169 | Y |
| F067544 | Metagenome / Metatranscriptome | 125 | N |
| F085388 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078117_100021143 | F067544 | N/A | MKKTFYEVLWAIAKEEKLIDKWIYEEKLLFNGTTYSWTPKALEEADAEEVLGKLQVSRVPGSLKEQSLKEIFIDEPKHSNSKDIVIPPTWLGDFISKFSAKNLGISGKTTDKSSVVKRLIKFLSEYDYTLEEISQATDLCISYMKQQGSIKYIRECGYFIFKKVDGVDQSDLAKWCEELKNGSGPAYNSHQIL* |
| Ga0078117_100021192 | F023065 | N/A | MYTNSDLIARVKSANKFISDDDMISDRYIYGLLKTKAATLLRREINLRRLLTSDNVYQAYECVHLIEAPGSECDLNCPIRRTKHKLPNIDEGLYSYFIQGVFNTSNSQELFPTTIRDFINHNSLRFKTPKKYYTIRNGYLYVLDPDVECVNMYAYFTESIEDLDGTQCVSMYDKQFKFPAYLTDTLVEMCNQSLINYHKIPYETEDNNRDEPN* |
| Ga0078117_100021194 | F085388 | N/A | MTNCCPNNNCVEIVPSGCVKYTGTPTTGGLIDSFDSCDPYLNDLLKLLDDNVTLLDARVGLNKSTFDAANTACGTTPVISTTGLTVKDDKYYSSEVVIKLVGVICDLRSRMNYLTAGNINTNSGNVHWLDLPLDGKVDLGCLESYCQGGTIFTLKDLLNAIIAKICA* |
| Ga0078117_100021195 | F036563 | N/A | MNVQLNLEVLKAKDCSYLTIIDTSVYPVAPTSASIFIGVPGYDSAYEFPFLFGQTNTYNSYSFGFTTSATSDFTELPDGVYSLVVTTCPDTGVNSRHHLRTCKIDCRLAAQWAKYVDCCDDEKILYYLDKIEFLLKGAEAHADLCNPTKATELYKKADDLLRRLELDC* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |