Scaffold Ga0077776_1089650

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0077776_1089650

Scaffold Ga0077776_1089650

Overview

Basic Information
Taxon OID	3300005753 Open in IMG/M
Scaffold ID	Ga0077776_1089650 Open in IMG/M
Source Dataset Name	Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - mega-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1271
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Deep-Sea Hydrothermal Vent → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise
Coordinates	Lat. (^o)	18.375	Long. (^o)	-81.797	Alt. (m)		Depth (m)	2370
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F044553	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0077776_10896502	F001334	GGA	MMKFKEYLQLNADDSIEQIMNGEWIQKSRSTWKATDDEDNKIEIHNDGHDPELNGESWTVHTNTFAPKAFAYFTKQFIKEVKPSEVTHARTRIYPSTSN*
Ga0077776_10896503	F044553	GAGG	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVD

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