NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0076924_1075215

Scaffold Ga0076924_1075215


Overview

Basic Information
Taxon OID3300005747 Open in IMG/M
Scaffold IDGa0076924_1075215 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - control T14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17260
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (11.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001913Metagenome / Metatranscriptome618Y
F010473Metagenome / Metatranscriptome303Y
F011526Metagenome / Metatranscriptome290Y
F019630Metagenome / Metatranscriptome228N
F043091Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0076924_10752152F001913N/AMIKEILELLRDTDCKSEIVQIAKGKNKFPDSFKELIKREWRK*
Ga0076924_107521521F043091N/AMELTEKKLEKISGAILSSFINLHLLEDAEKIGLFRQRVRNNIRRTISDLKEIEINYYNKIEEVDEKELGDKLTANKLIFLDWVLNKFDFNDFCKIQEVCLAYEADKERITQVTDEVLINNGAEQIDE*
Ga0076924_107521528F010473N/AMNLIRYEVKAGFFKGFLFGVRHYPFDDEEMYEEDIVLYIGIFQIILTLIYEK*
Ga0076924_107521529F019630GAGGMPKIKNKIVLKNCNYQHQQYCFKKGFIIYPVVSGKMFKIYCNRIKGNYYMKGKEFNKQESFQAIWNLYTKIYNYEFNKIRG*
Ga0076924_10752158F011526N/AMIAIVECFIHHKTGKEIRIAKPTKPNHYLLLTKAYENCKGFFIKH*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.