Basic Information | |
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Taxon OID | 3300005662 Open in IMG/M |
Scaffold ID | Ga0078894_10508967 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1080 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007644 | Metagenome / Metatranscriptome | 347 | Y |
F019324 | Metagenome / Metatranscriptome | 230 | Y |
F020171 | Metagenome / Metatranscriptome | 225 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078894_105089672 | F007644 | GGAG | MKLHLISLEQDLEENPASIHVVDIEGQIYATKHLLSVATDIMNESNERYE* |
Ga0078894_105089673 | F019324 | GAG | MMLGYEMSDVDEMIDAIQSIITTVNSDDDPWLYNNLWKAQEFLQGLWAEGYFDGYQD* |
Ga0078894_105089674 | F020171 | AGGCGG | MEQFIDTLAEHITGAIQQEISEDLFDQWSNKNLDEGSDYAEYMFMQYASDDLKQQYNEYYGYIEGDEFLL* |
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