NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10499404

Scaffold Ga0078894_10499404


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10499404 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F024786Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_104994041F024786GAGGLTTYRVFGNKYQNYYTIVDAADEFQAVDIANALPETEWNSIPTDDVVEATDVYLNEDTSMDLQLNI*
Ga0078894_104994042F001019GGAGGMSYAPSLEILEVAYEVSPGGVRTFEVYDKGDNYDIMDMPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMREMLDNL*
Ga0078894_104994043F000441AGGAGGMKMSDQYINDQLNKAQQLLWGGSETENIEAHNIISKLIRDRIEQTEGL*
Ga0078894_104994044F001781GGAGMKPQDKDKLNECLSILDTTDLGLSLVWLWTWSTIKNFMGDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHEDVMEWMLNRDYMVDSMFEQEDEDEDE*
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