NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10091940

Scaffold Ga0078894_10091940


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10091940 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2663
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002598Metagenome / Metatranscriptome544Y
F004840Metagenome / Metatranscriptome421Y
F006744Metagenome / Metatranscriptome365Y
F007263Metagenome / Metatranscriptome354Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_100919401F007263N/ANSTIVIDQNEFYEIIDRQHFCCDESQFVYVCKAHGEQMGCYFCEFDPYGNCECE*
Ga0078894_100919403F002598AGAAGGMATKLYTIESLLIGKHYRSRNRFFSGEIISAEKREGIWYGENTEAYVIGVNAKGKIRTQYATIAVKVGE*
Ga0078894_100919404F000447GAGMGYIEFARINEEGVSWVDLSKATPEELLDIEIGLFQEGAI*
Ga0078894_100919405F006744AGGMNLDEFRAAVLAQREASKAEALSVLSATISATTRKEN*
Ga0078894_100919406F017995AGGAMANVKQLMEIVAAPCDECGGAGFVFFGNEYDYDVEPCDCVADVEDELTLDWVNE*
Ga0078894_100919407F004840N/AMEYKVTCQYDYEESPHWTGKYDDEMEAWKNFFLFKDWGMANEYSTVNIYTPSAKCYTKIFYRDGRVVTR*
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