| Basic Information | |
|---|---|
| Taxon OID | 3300005645 Open in IMG/M |
| Scaffold ID | Ga0077109_1004948 Open in IMG/M |
| Source Dataset Name | Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6955 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water → Brackish Water Microbial Communities From Lake Sakinaw,Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sakinaw Lake (SAK), BC, Canada | |||||||
| Coordinates | Lat. (o) | 49.682207 | Long. (o) | -124.005217 | Alt. (m) | Depth (m) | 120 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022145 | Metagenome | 215 | Y |
| F034486 | Metagenome / Metatranscriptome | 174 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0077109_10049486 | F022145 | AGGA | MIPKEIKRKKYTVQIGYSKKAKEKKLLKFISKSGDEFEISAEELSSMLIGGVNSDTLEATFVSIDKINVVEVGRQLECVLDKDMKKGDKININYKHPYPVEFAVIEQAYGIAKINMDVPVFTLTKEYINKARTMVKPEQKNFLQKFYSSFKNLNLKK* |
| Ga0077109_10049487 | F034486 | N/A | MENEQSLKQKKIALAQSEHASVVVELMKDCMSKSPIIAKTEWETIVNAITLEVQGTLIRTMVDYLEEIRLGKLHQLKE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |