| Basic Information | |
|---|---|
| Taxon OID | 3300005584 Open in IMG/M |
| Scaffold ID | Ga0049082_10000699 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9943 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (72.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006543 | Metagenome / Metatranscriptome | 370 | Y |
| F008812 | Metagenome / Metatranscriptome | 327 | Y |
| F035281 | Metagenome / Metatranscriptome | 172 | Y |
| F057320 | Metagenome / Metatranscriptome | 136 | Y |
| F086678 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049082_1000069910 | F008812 | GGAG | MIQLIGIFIAILGLTYNGVKDYQKGDLKLPKFPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHEKGQWYDYAPQQRRYETTPQPSQDQTQGQATVASSNGTQGTPLYRYGQSPQANTNTIR* |
| Ga0049082_100006992 | F006543 | GGAG | MKKFSFAVDVVCDEIDSADVVAVLTKALSDELPGDVHANVKAAGIKGFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKEQIETIA* |
| Ga0049082_1000069923 | F035281 | AGGAG | MMKFALVFALMFVGSSVFAGECADGNCMLRSRVVNVTREVVSVPVVVTRRTVETSRVVGRRNLVRVRNVMR* |
| Ga0049082_100006998 | F057320 | N/A | MRQGFGKRIISQSLKGIEMSYVGLYQDEGSKNAFYIVKDKKIERRRVGFKEFENEREAKFAHRIQKCLAQHDLAPMVYGDVGMIRRHTGEFTCCGYLTEVAKPMPRCKDVDCECFQEMSSCSNSITINVVVEELREQGLDYNDAHKGNFGYVRRKGSWVPVVIDLGIESFTEWDESIYGEFDYDENECFASDYGMCTCTACKNLRKENNE* |
| Ga0049082_100006999 | F086678 | AGGA | MSKYYIKSGTLERIYSCNKCPRDAAMDIIWETTKNDTLDEYIYLDERGYKDYISADKNTSVLNTIHIFKEAGWDIN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |