NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10000467

Scaffold Ga0049082_10000467


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10000467 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11543
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004430Metagenome / Metatranscriptome438Y
F005088Metagenome / Metatranscriptome412Y
F011076Metagenome295Y
F027844Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0049082_1000046714F004430AGGMATGAEILSYLLPRGGWYIAGNDYEGIQFLECEPITKAQYEAGFAQYDAWKAEQDAKAAADKAALLAKLGITADEAKLLLS*
Ga0049082_1000046715F011076AGGAGMGPVQFSVSNQTKYDLRVQASNGAQAGAVSGASTGLSFTPDDTNITCAMRWYQDGVCVLQGSVAWSAGGSGSDDGWSTSNLICMNGNM
Ga0049082_100004678F027844N/AMARLKVTRTDGAVAEYQITPRVEYAFELHFKKGFHKAFRDDEMQTMVYWLCWECIRTSGETVPIFGAEFLDTLAKVDVLDDNPLG*
Ga0049082_100004679F005088N/AVGRGSFGYLVAQLAVETGIPPQHLLELDATMFANMLQVLTDRAKEMQNASRGKRRNGSS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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