NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049085_10033361

Scaffold Ga0049085_10033361


Overview

Basic Information
Taxon OID3300005583 Open in IMG/M
Scaffold IDGa0049085_10033361 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1904
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F004840Metagenome / Metatranscriptome421Y
F007263Metagenome / Metatranscriptome354Y
F050376Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0049085_100333611F004840AGGAMYKITVAYDSNAPHWQHDYSDEMKAWQAFFQFTDWGAANEYSTVNIYTPELVCYTKVFYREGRRVVVK*
Ga0049085_100333613F000447GAGMGYIEIFRINENGAGWVDFSEATPDELFQIEIGLLNEGAFE*
Ga0049085_100333614F007263AGGMINTYIDENEFYFIKDEIKICCDEQQFIYVCKAHGEQQGCYFCEFDYSNECECEN*
Ga0049085_100333616F001562GAGMKSQFELDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAEMENE*
Ga0049085_100333618F050376AGAAGGMNLAEYKAHVEAQRKESLLKAIATMSEANDKMSSLFNTKEAN*
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Institute for Fundamental Biomedical Research
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