Basic Information | |
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Taxon OID | 3300005582 Open in IMG/M |
Scaffold ID | Ga0049080_10019381 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2372 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000441 | Metagenome / Metatranscriptome | 1136 | Y |
F001019 | Metagenome / Metatranscriptome | 804 | Y |
F001781 | Metagenome / Metatranscriptome | 635 | Y |
F003603 | Metagenome / Metatranscriptome | 477 | Y |
F034924 | Metagenome / Metatranscriptome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0049080_100193813 | F001781 | AGGAG | MKAEDKDKLNECLKILDTTDLGLSMVWLWTWSTINNIMEDETYKVKVTQDQMWDHLCEAVRAGQGFSLEYGAEQHQEEVQDWMLSRDYIVDTMFEDDEEDADATD* |
Ga0049080_100193814 | F000441 | AGGAGG | MQQTDNHINTELSKAQALLWSGSLHEVDEAHNIISNLIKDRMGKAEGTNV* |
Ga0049080_100193815 | F001019 | GAGG | MSDYVPSLEILEVQYSCSPGGIDMFEVYDKSNIPLDIPIYETESLTEAVLFCYNLGKDFTVRTYAEWEERESLYASV* |
Ga0049080_100193816 | F034924 | GGA | MPLYRVFGTKFTNYYTIVSATDEYQAAELANARPLIEWDEIPTDDVVEATDVFLDEDTLIDLEGGL* |
Ga0049080_100193818 | F003603 | AGGCGG | MKTKEEQIGELLANSVEDHFFNPAALGRYLADQPTYTLDRIMEVVAWVIEKQARRYDREVETGGQVSEGLAIAHKLDTVIDKIKISNDFKNINLPITPKERAEFIKSLPKEQEKSYRYSWLHETNNGSNATNIVQATI* |
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